BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002G07LP1|AL425018
(332 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig171 585 e-167
>3x_Contig171
Length = 902
Score = 585 bits (288), Expect = e-167
Identities = 308/321 (95%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 10 gatcgtccgctttcgnggtcaattaatattaactaattatttatatataaaaatatatat 69
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gatcgtccgctttcg-ggtcaattaatattaactaattatttatatataaaaatatatat 329
Query: 70 aaathatatatacaangtttatattcaaattatttataataatttaattattatttkgct 129
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 330 aaattatatatacaatgtttatattcaaattatttataataatttaattattattttgct 389
Query: 130 aatactaattacttgctgacccattabacaaaaggtacgttattaatatmbtaayatata 189
|||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct: 390 aatactaattacttgctgacccattatacaaaaggtacgttattaatatattaatatata 449
Query: 190 tttmtaactgcttataaaawaaccaattacttattttcccttacggtacttaatttgckt 249
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 450 tttataactgcttataaaataaccaattacttattttcccttacggtacttaatttgctt 509
Query: 250 attaataatattbagbcttagaactagtttgtcctatattcttacataatatgtttacat 309
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 attaataatatttagtcttagaactagtttgtcctatattcttacataatatgtttacat 569
Query: 310 aatacttaacttattatatat 330
|||||||||||||||||||||
Sbjct: 570 aatacttaacttattatatat 590
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.714 1.33
Gapped
Lambda K H
1.41 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2881
Number of Sequences: 1807
Number of extensions: 2881
Number of successful extensions: 142
Number of sequences better than 1.0e-20: 1
length of query: 332
length of database: 10,358,551
effective HSP length: 15
effective length of query: 317
effective length of database: 10,331,446
effective search space: 3275068382
effective search space used: 3275068382
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.9 bits)